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Coerce to a list

Source: R/methods-extract.R
as.list.Rd

Generic to coerce to a list if possible. Used with the giotto object, it disassembles it into a list of subobjects.

Usage

# S4 method for class 'giotto'
as.list(x, slots, spat_unit = NULL, feat_type = NULL, name = NULL, ...)

Arguments

x

the object to coerce

slots

character vector. Which data slots to include in list. See details

spat_unit

spatial unit (e.g. "cell")

feat_type

feature type to use (e.g. "rna", "protein")

name

name of the elements to select from the slot

...

additional arguments

Value

list

Details

  • Giotto method - the slots argument currently accepts any or multiple of: "spatial_info", "spatial_locs", "spatial_network", "feat_info", "expression", "cell_metadata", "feat_metadata", "spatial_enrichment", "nn_network", "dimension_reduction", "multiomics"