Combine spatial cell information (e.g. polygon)
and spatial feature information (e.g. transcript locations)
Usage
combineSpatialCellFeatureInfo(
gobject,
spat_unit = NULL,
feat_type = NULL,
selected_features = NULL
)
Arguments
- gobject
Giotto object
- spat_unit
spatial unit
- feat_type
feature type(s)
- selected_features
select set of features
Value
list of data.table(s)
Details
The returned data.table has the following columns:
sdimx: spatial feature location on the x-axis
sdimy: spatial feature location on the y-axis
feat_ID: unique feature ID
cell_ID: unique cell ID
used: how often was the feature used/assigned to a cell
feat: selected feature(s)
