Create instructions for giotto functions
createGiottoInstructions.Rd
Function to set global instructions for giotto functions
Usage
createGiottoInstructions(
python_path = NULL,
show_plot = NULL,
return_plot = NULL,
save_plot = NULL,
save_dir = NULL,
plot_format = NULL,
dpi = NULL,
units = NULL,
height = NULL,
width = NULL,
is_docker = FALSE,
plot_count = 0,
fiji_path = NULL,
no_python_warn = FALSE
)
Arguments
- python_path
path to python binary to use
- show_plot
print plot to console, default = TRUE
- return_plot
return plot as object, default = TRUE
- save_plot
automatically save plot, dafault = FALSE
- save_dir
path to directory where to save plots
- plot_format
format of plots (defaults to png)
- dpi
resolution for raster images
- units
units of format (defaults to in)
- height
height of plots
- width
width of plots
- is_docker
using docker implementation of Giotto (defaults to FALSE)
- plot_count
(global option) start count for creating automatic unique plots
- fiji_path
path to fiji executable
- no_python_warn
turn off warning that no compatible python env has been detected
See also
More online information can be found here https://rubd.github.io/Giotto_site/articles/instructions_and_plotting.html