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createGiottoLargeImage
createGiottoLargeImage.Rd
Creates a large giotto image that can be added to a Giotto subcellular object. Generates deep copy of SpatRaster
Usage
createGiottoLargeImage(
raster_object,
name = "image",
negative_y = TRUE,
extent = NULL,
use_rast_ext = FALSE,
image_transformations = NULL,
flip_vertical = FALSE,
flip_horizontal = FALSE,
xmax_bound = NULL,
xmin_bound = NULL,
ymax_bound = NULL,
ymin_bound = NULL,
scale_factor = 1,
verbose = TRUE
)
Arguments
- raster_object
terra SpatRaster image object
- name
name for the image
- negative_y
Map image to negative y spatial values if TRUE. Meaning that origin is in upper left instead of lower left.
- extent
SpatExtent object to assign spatial extent. Takes priority unless use_rast_ext is TRUE.
- use_rast_ext
Use extent from input raster object
- image_transformations
vector of sequential image transformations - under construction
- flip_vertical
flip raster in a vertical manner
- flip_horizontal
flip raster in a horizontal manner
- xmax_bound, xmin_bound, ymax_bound, ymin_bound
assign min and max x and y values for image spatial placement
- scale_factor
scaling of image dimensions relative to spatial coordinates
- verbose
be verbose