Create S4 nnNetObj — createNearestNetObj • GiottoClass

Create an S4 nnNetObj

Usage

createNearestNetObj(
  name = "test",
  network,
  nn_type = NULL,
  spat_unit = "cell",
  feat_type = "rna",
  provenance = NULL,
  misc = NULL
)

Arguments

name: name of nnNetObj
network: igraph object or data.frame containing nearest neighbor information (see details)
nn_type: type of nearest neighbor network
spat_unit: spatial unit (e.g. "cell")
feat_type: feature type (e.g. "rna", "dna", "protein")
provenance: origin of aggregated information (if applicable)
misc: misc

Details

igraph and dataframe-like inputs must include certain information. For igraph, it must have, at minimum vertex 'name' attributes and 'distance' edge attribute. dataframe-like inputs must have 'from', 'to', and 'distance' columns