Create S4 spatEnrObj — createSpatEnrObj • GiottoClass

Create S4 spatEnrObj

Usage

createSpatEnrObj(
  enrichment_data,
  name = "test",
  spat_unit = "cell",
  feat_type = "rna",
  method = NULL,
  provenance = NULL,
  misc = NULL,
  verbose = TRUE
)

Arguments

enrichment_data: spatial enrichment results, provided a dataframe-like object
name: name of S4 spatEnrObj
spat_unit: spatial unit of aggregated expression (e.g. 'cell')
feat_type: feature type of aggregated expression (e.g. 'rna', 'protein')
method: method used to generate spatial enrichment information
provenance: origin data of aggregated expression information (if applicable)
misc: misc additional information about the spatial enrichment or how it was generated
verbose: be verbose