S4 dimObj Class

Framework to store dimension reduction information

Value

dimObj

Slots

name

name of dimObject

feat_type

feature type of data

spat_unit

spatial unit of data

provenance

origin of aggregated information (if applicable)

reduction

whether reduction was performed on 'feats' or 'cells'

reduction_method

method used to generate dimension reduction

coordinates

embedding coordinates

misc

method-specific additional outputs

Examples

GiottoData::loadSubObjectMini("dimObj")
#> An object of class dimObj : "pca"
#> --| Contains dimension reduction generated with: pca 
#> ----| for feat_type: rna 
#> ----|     spat_unit: aggregate 
#> 
#>    100 dimensions for 462 data points
#> 
#> Additional included info:
#> [1] "eigenvalues" "loadings"   
#>