Converts .gef file (output stereo-seq pipeline) into
giotto subcellular object
Usage
gefToGiotto(gef_file, bin_size = "bin100", verbose = FALSE, h5_file = NULL)
Arguments
- gef_file
path to .gef file
- bin_size
bin size to select from .gef file
- verbose
be verbose
- h5_file
name to create and on-disk HDF5 file
Details
Function in beta. Converts .gef object to Giotto object.
There are six possible choices for bin_size:
bin1, bin10, bin20, bin50, bin100, bin200.
See SAW pipeline for additional information about the gef file.
