create a count matrix based on overlap results
from calculateOverlapPolygonImages
Usage
overlapImagesToMatrix(
gobject,
name = "raw",
poly_info = "cell",
feat_info = "protein",
name_overlap = "images",
aggr_function = "sum",
image_names = NULL,
spat_locs_name = "raw",
return_gobject = TRUE
)Arguments
- gobject
giotto object
- name
name for the overlap count matrix
- poly_info
polygon information
- feat_info
feature information
- name_overlap
name of the overlap
- aggr_function
function to aggregate image information (default = sum)
- image_names
names of images you used
- spat_locs_name
name for spatial centroids / locations associated with matrix
- return_gobject
return giotto object (default: TRUE)