Read list of polygons information — readPolygonData • GiottoClass

Function extract list of polygons when given raw input as either mask or tabular data. Calls the respective createGiottoPolygons functions.
If a giottoPolygon object is passed then no edits will be made other than updating the name slot if the list is named.

Usage

readPolygonData(
  data_list,
  default_name = "cell",
  input = "guess",
  polygon_mask_list_params = NULL,
  polygon_dfr_list_params = NULL,
  calc_centroids = FALSE,
  verbose = TRUE
)

Arguments

data_list: read polygon results from list
default_name: default name to assign if polygonlist is not a list. If polygonlist is an unnamed list then default_name will be used as part of the template for generating indexed default names.
input: what type of input is being used. When set to 'guess', uses 'mask' if polygonlist is of type character and 'table' when polygonlist is dataframe-like
polygon_mask_list_params: parameters for when using 'mask' workflow
polygon_dfr_list_params: parameters for when using 'table' workflow
calc_centroids: whether centroids should be calculated during polygon creation
verbose: be verbose