Replace part of an object with [<-

Replace values from Giotto Classes. Providing empty brackets such as x[] <- value will usually replace the entire contained data representation.

Usage

# S4 method for class 'coordDataDT,missing,missing,ANY'
x[i, j] <- value

# S4 method for class 'metaData,missing,missing,ANY'
x[i, j] <- value

# S4 method for class 'dimObj,missing,missing,ANY'
x[i, j] <- value

# S4 method for class 'exprData,missing,missing,ANY'
x[i, j] <- value

# S4 method for class 'spatNetData,missing,missing,ANY'
x[i, j] <- value

# S4 method for class 'nnData,missing,missing,ANY'
x[i, j] <- value

# S4 method for class 'enrData,missing,missing,ANY'
x[i, j] <- value

# S4 method for class 'spatGridData,missing,missing,ANY'
x[i, j] <- value

# S4 method for class 'giottoPoints,missing,missing,ANY'
x[i, j] <- value

# S4 method for class 'giottoPolygon,missing,missing,ANY'
x[i, j] <- value

# S4 method for class 'giottoLargeImage,missing,missing,ANY'
x[i, j] <- value

# S4 method for class 'giottoImage,missing,missing,ANY'
x[i, j] <- value

# S4 method for class 'affine2d,missing,missing,ANY'
x[i, j] <- value

Arguments

x

Giotto S4 object to replace information in

i, j

indices specifying elements to replace. Indices are numeric or character vectors or empty

value

values(s) to set

Value

same as x

`[<-` methods

Assign to coordinates slot in giotto S4

Assign to metaDT slot in giotto S4

Assign to coordinates slot in giotto S4 dimObj

Assign to exprMat slot in giotto S4

Assign to networkDT slot in giotto S4

Assign to igraph slot in giotto S4

Assign to enrichDT slot in giotto S4

Assign to gridDT slot in giotto S4

Assign to spatVector slot in giotto S4

Assign to spatVector slot in giottoPolygon

Assign to affine slot in affine2d

See also

subset_bracket subset_dollar replace_dollar

Examples

gpoints <- GiottoData::loadSubObjectMini("giottoPoints")

gpoints[] <- gpoints[]