Deprecated. Please use either seuratToGiottoV4 or seuratToGiottoV5
Usage
seuratToGiotto(
sobject,
spatial_assay = "Spatial",
dim_reduction = c("pca", "umap"),
subcellular_assay = "Vizgen"
)Arguments
- sobject
Input Seurat object to convert to Giotto object
- spatial_assay
Specify name of the spatial assay slot in Seurat. Default is
"Spatial".- dim_reduction
Specify which dimensional reduction computations to fetch from
- subcellular_assay
Specify name of the subcellular assay in input object. Default is
"Vizgen".