deprecated

deprecated

Usage

subsetGiottoLocsMulti(
  gobject,
  spat_unit = ":all:",
  feat_type = NULL,
  feat_type_ssub = ":all:",
  spat_loc_name = NULL,
  x_max = NULL,
  x_min = NULL,
  y_max = NULL,
  y_min = NULL,
  z_max = NULL,
  z_min = NULL,
  poly_info = NULL,
  return_gobject = TRUE,
  verbose = TRUE
)

Arguments

gobject

giotto object

spat_unit

spatial unit to subset

feat_type

(optional) feat type to use if return_gobject = TRUE and a combined data.table output is desired.

feat_type_ssub

which feat types across which to apply the spatial subset

spat_loc_name

name of spatial locations to use within spat_unit

x_max, x_min, y_max, y_min, z_max, z_min

minimum and maximum x, y, and z coordinates to subset to

poly_info

named list of character vectors. names correspond to spat_unit and character vectors are the polygons associated with those spat units

return_gobject

return Giotto object

verbose

be verbose

Value

giotto object