combineCellData

combine cell data information

Usage

combineCellData(
  gobject,
  feat_type = "rna",
  include_spat_locs = TRUE,
  spat_loc_name = "raw",
  include_poly_info = TRUE,
  poly_info = "cell",
  include_spat_enr = TRUE,
  spat_enr_names = NULL
)

Arguments

gobject

giotto object

feat_type

feature type

include_spat_locs

include information about spatial locations

spat_loc_name

spatial location name

include_poly_info

include information about polygon

poly_info

polygon information name

include_spat_enr

include information about spatial enrichment

spat_enr_names

names of spatial enrichment results to include

Value

data.table with combined spatial information