S4 giottoLargeImage Class

Image class for Giotto that uses terra SpatRaster as a backend. If images are loaded from a file on disk then they are worked with lazily, where only the values needed at any moment are loaded/sampled into memory. Since SpatRaster objects are C pointers, giottoLargeImage and inheriting classes need to run reconnect() after loading from a saved object.

Value

giottoLargeImage

Slots

name

name of large Giotto image

raster_object

terra SpatRaster object

extent

tracks the extent of the raster object. Note that most processes should rely on the extent of the raster object instead of this.

overall_extent

terra extent object covering the original extent of image

scale_factor

image scaling relative to spatial locations

resolution

spatial location units covered per pixel

max_intensity

approximate maximum value

min_intensity

approximate minimum value

max_window

value to set as maximum intensity in color scaling

colors

color mappings in hex codes

is_int

values are integers

file_path

file path to the image if given

OS_platform

Operating System to run Giotto analysis on

Examples

giottoLargeImage()
#> NULL giottoLargeImage