Reconnect a GiottoClass object

Usage

# S4 method for class 'giottoLargeImage'
reconnect(x, path = NULL, ...)

# S4 method for class 'giottoImage'
reconnect(x, path = NULL, ...)

Arguments

x: object to reconnect
path: character. (optional) New filepath to associate with the object. Only needed if the filepath is not normally carried by the object or the path has changed.
...: additional params to pass

Value

GiottoClass object

Examples

g <- GiottoData::loadGiottoMini("visium")
#> 1. read Giotto object
#> 2. read Giotto feature information
#> 3. read Giotto spatial information
#> 3.1 read Giotto spatial shape information
#> 3.2 read Giotto spatial centroid information
#> 3.3 read Giotto spatial overlap information
#> 4. read Giotto image information
#> python already initialized in this session
#>  active environment : 'giotto_env'
#>  python version : 3.10
#> checking default envname 'giotto_env'
#> a system default python environment was found
#> Using python path:
#>  "/usr/share/miniconda/envs/giotto_env/bin/python"
g_image <- getGiottoImage(g, image_type = "largeImage")

reconnect(g_image)
#> An object of class giottoLargeImage : "alignment"
#> Image extent            : 2364.5, 6522.5, -5425.25, -2620.75 (xmin, xmax, ymin, ymax)
#> Original image extent   : 2364.5, 6522.5, -5425.25, -2620.75 (xmin, xmax, ymin, ymax)
#> Scale factor            : 13.2420382165605, 13.2287735849057 (x, y)
#> Resolution              : 0.0755170755170755, 0.0755927972900695 (x, y)
#> Layers                  : 4 
#> Estimated max intensity : 174 
#> Estimated min intensity : 0 
#> Values                  : integers
#> File path               : '/home/runner/work/_temp/Library/GiottoData/Mini_datasets/Visium/VisiumObject/Images/alignment_spatRaster'