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Update giotto object

Source: R/classes.R
updateGiottoObject.Rd

Updates the giotto object for changes in structure for backwards compatibility with earlier versions

Usage

updateGiottoObject(gobject)

Arguments

gobject

giotto object to update

Value

giotto object

Details

Supported updates:

  • 3.2.0 update adding multiomics slot

  • master branch to suite - TODO

Examples

g <- GiottoData::loadGiottoMini("visium")
#> 1. read Giotto object
#> 2. read Giotto feature information
#> 3. read Giotto spatial information
#> 3.1 read Giotto spatial shape information
#> 3.2 read Giotto spatial centroid information
#> 3.3 read Giotto spatial overlap information
#> 4. read Giotto image information
#> python already initialized in this session
#>  active environment : 'giotto_env'
#>  python version : 3.10
#> checking default envname 'giotto_env'
#> a system default python environment was found
#> Using python path:
#>  "/usr/share/miniconda/envs/giotto_env/bin/python"

g <- updateGiottoObject(g)