GiottoVisuals contains the main plotting functions of Giotto Suite
Installation
You can install GiottoVisuals like:
if (!requireNamespace("pak", quietly = TRUE)) install.packages("pak")
pak::pak("drieslab/GiottoVisuals")Script Organization by Prefixes:
aux_ - auxilliary and meta functionality
- aux_output.R - plot output handling
- aux_save.R - plot saving
- aux_defaults.R - set plotting defaults
- aux_visuals.R - general auxilliary plotting functions
plot_ - general plotting functions organized by type of plot
- plot_scatter.R - scatter plots
- plot_violin.R - violin plots
- plot_heatmap.R - heatmaps
- plot_dendrogram.R - dendrograms
vis_ - specific plotting functions organized by topic - vis_hvf.R - highly variable features plots
- vis_pc.R - principle components plots
- vis_spatial.R - - vis_spatial_in_situ.R -
gg_ - ggplot2 related
- gg_info_layers.R - modular internals for plotting the different layers of information
- ``
Other:
- color_palettes.R - color palettes and factory functions
-
vis_spatialDE.R-
Package:
- package_imports.R - all imports
- globals.R - global variables
- dd.R - dummy documentation for inheriting
- zzz.R - onloads