Changelog

Source: NEWS.md

GiottoVisuals 0.2.6 (2024/10/27)

new

• combine_aes() for combining ggplot2 mappings in a last item wins manner. Allows more than 2 aes to be combined at the same time and provides an optional informative warning
• gg_params() for combining and sorting ggplot2 mappings, toplevel params, and data into an arg list for plotting.

GiottoVisuals 0.2.5 (2024/09/27)

new

• gpsparam() for generating an object containing plot saving parameters
• cowplot::plot_grid() re-exported
• dotPlot() visualization

bug fixes

• fix coord_fix_ratio passing in spatFeatPlot2D() #972 by kaizen89

GiottoVisuals 0.2.4 (2024/07/26)

enhancements

• giottoLargeImage max_window and colors slot info is now followed during ggplot plotting
• giottoAffineImage compatibility for giotto ggplot2 plotting functions
• gg_annotation_raster() now also performs geom_blank() with the extent provided through ext param. This can be turned off by setting geom_blank() = FALSE

new

• geom_text_repel() and geom_label_repel() from ggplot2 are now re-exported

GiottoVisuals 0.2.3 (2024/05/28)

bug fixes

• hotfix for sprintf numerics usage %d -> %f

GiottoVisuals 0.2.2 (2024/05/22)

breaking changes

• option "giotto.color_c_pal" has been split into "giotto.color_cd_pal" and "giotto.color_cs_pal" for divergent and sequential continuous palettes

enhancements

• some options are now initialized on library load to make them easier to access

GiottoVisuals 0.2.0 (2024/05/13)

changes

• GiottoClass >= 0.3.0 is now required. (object no longer has @largeImages slot)
• largeImage_name arg is deprecated. image_name arg should be used instead
• spatial y dim values are not vertically plotted
• deprecated spatDimGenePlot3D(), spatGenePlot3D(), dimGenePlot3D in favor of the ‘feat’ naming scheme

bug fixes

• removed centroid point that unintentionally gets plotted in polygons

enhancements

• theme_param arg has been added to some plotting functions that provides access to ggplot2::theme() finetuning
• gg_annotation_raster() now performs plot extent detection and resampling of largeImages
• resampling args are now globally settable (see ?auto_image_resample)
• polygon_alpha default is now 1 when plotting polys without images, and 0.5 when plotting with images.

GiottoVisuals 0.1.7 (2024/03/11)

Changes

• Change default values show_plot = NA, return_plot = NA, save_plot = NA -> show_plot = NULL, return_plot = NULL, save_plot = NULL.
• Add examples to exported functions
• Update License

GiottoVisuals 0.1.6 (2024/03/07)

bug fixes

• fix spatPlot2D() and spatFeatPlot2D() largeImage plotting when using group_by
• fix edge_alpha arg in spatFeatPlot2D()

new

• mixRGB() vectorized additive mixing in RGB space
• mixHSV() vectorized color mixing in HSV space

GiottoVisuals 0.1.4 (2024/01/25)

bug fixes

• fix plotting color gradient when using arg point_shape = "no_border"
• fix image NA value #865 by rbutleriii

new

• gg_annotation_raster() internal generic for adding a giottoImage, giottoLargeImage, or list thereof to a ggplot object

GiottoVisuals 0.1.2 (2023/01/12)

bug fixes

• fix ComplexHeatmap saving size issue #861 by rbutleriii

GiottoVisuals 0.1.1 (2023/12/16)

Breaking Changes

• Removed: getDistinctColors() to GiottoUtils

Added

• Add: getDistinctColors() and getRainbowColors() as re-exports from GiottoUtils

Changes

• Changed: Package internal functions now have . prefix
• Changed: GiottoUtils and GiottoClass moved to Imports
• Changed: Other internal function naming changes to bring in line with updates to GiottoUtils

GiottoVisuals 0.1.0 (23/11/29)

Initial release