Get multiomics integration results

Get a multiomics integration result from a Giotto object

Usage

get_multiomics(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  integration_method = "WNN",
  result_name = "theta_weighted_matrix"
)

Arguments

gobject

A Giotto object

spat_unit

spatial unit (e.g. 'cell')

feat_type

integrated feature type (e.g. 'rna_protein')

integration_method

multiomics integration method used. Default = 'WNN'

result_name

Default = 'theta_weighted_matrix'

Value

A multiomics integration result (e.g. theta_weighted_matrix from WNN)

See also

Other multiomics accessor functions: getMultiomics(), setMultiomics(), set_multiomics()

Other functions to get data from giotto object: getDimReduction(), getExpression(), getFeatureInfo(), getGiottoImage(), getMultiomics(), getNearestNetwork(), getPolygonInfo(), getSpatialEnrichment(), getSpatialGrid(), getSpatialLocations(), getSpatialNetwork(), get_NearestNetwork(), get_dimReduction(), get_feature_info(), get_giottoImage(), get_polygon_info(), get_spatialGrid(), get_spatialNetwork(), get_spatial_enrichment(), get_spatial_locations()