saveGiotto

Saves a Giotto object to a specific folder structure

Usage

saveGiotto(
  gobject,
  foldername = "saveGiottoDir",
  dir = getwd(),
  method = c("RDS", "qs"),
  method_params = list(),
  overwrite = FALSE,
  image_filetype = "PNG",
  verbose = TRUE,
  ...
)

Arguments

gobject

Giotto object

foldername

Folder name

dir

Directory where to create the folder

method

method to save main object

method_params

additional method parameters for RDS or qs

overwrite

Overwrite existing folders

image_filetype

the image filetype to use, see writeRaster. Default is "PNG". For TIFF outputs, try "COG"

verbose

be verbose

...

additional parameters for writeRaster

Value

Creates a directory with Giotto object information

Details

Works together with loadGiotto to save and re-load Giotto objects. Additional method_params need to be provided as a list and will go to saveRDS or qsave