show the available giotto spatial feature information
See also
Other functions to show data in giotto object:
showGiottoCellMetadata(),
showGiottoDimRed(),
showGiottoExpression(),
showGiottoFeatMetadata(),
showGiottoImageNames(),
showGiottoNearestNetworks(),
showGiottoSpatEnrichments(),
showGiottoSpatGrids(),
showGiottoSpatLocs(),
showGiottoSpatNetworks(),
showGiottoSpatialInfo()
Examples
g <- GiottoData::loadGiottoMini("vizgen")
#> 1. read Giotto object
#> 2. read Giotto feature information
#> 3. read Giotto spatial information
#> 3.1 read Giotto spatial shape information
#> 3.2 read Giotto spatial centroid information
#> 3.3 read Giotto spatial overlap information
#> 4. read Giotto image information
#> python already initialized in this session
#> active environment : 'giotto_env'
#> python version : 3.10
#> checking default envname 'giotto_env'
#> a system default python environment was found
#> Using python path:
#> "/usr/share/miniconda/envs/giotto_env/bin/python"
showGiottoFeatInfo(g)
#> For Feature info: rna
#>
#> An object of class giottoPoints
#> feat_type : "rna"
#> Feature Information:
#> class : SpatVector
#> geometry : points
#> dimensions : 79761, 3 (geometries, attributes)
#> extent : 6400.037, 6900.032, -5149.983, -4699.979 (xmin, xmax, ymin, ymax)
#> source : rna_feature_spatVector.shp
#> coord. ref. :
#> names : feat_ID global_z feat_ID_uniq
#> type : <chr> <int> <int>
#> values : Mlc1 0 1
#> Gprc5b 0 2
#> Gfap 0 3
#>
#> -----------------------------
#>