showGiottoSpatEnrichments

shows the available spatial enrichment results

Usage

showGiottoSpatEnrichments(gobject, nrows = 4)

Arguments

gobject

giotto object

nrows

number of rows to print for each spatial enrichment data.table

Value

prints the name and small subset of available data.table

See also

Other functions to show data in giotto object: showGiottoCellMetadata(), showGiottoDimRed(), showGiottoExpression(), showGiottoFeatInfo(), showGiottoFeatMetadata(), showGiottoImageNames(), showGiottoNearestNetworks(), showGiottoSpatGrids(), showGiottoSpatLocs(), showGiottoSpatNetworks(), showGiottoSpatialInfo()

Examples

g <- GiottoData::loadGiottoMini("vizgen")
#> 1. read Giotto object
#> 2. read Giotto feature information
#> 3. read Giotto spatial information
#> 3.1 read Giotto spatial shape information
#> 3.2 read Giotto spatial centroid information
#> 3.3 read Giotto spatial overlap information
#> 4. read Giotto image information
#> python already initialized in this session
#>  active environment : 'giotto_env'
#>  python version : 3.10
#> checking default envname 'giotto_env'
#> a system default python environment was found
#> Using python path:
#>  "/usr/share/miniconda/envs/giotto_env/bin/python"

showGiottoSpatEnrichments(g)
#> Spatial unit:  aggregate  
#> 
#> --> Feature type:  rna  
#> 
#> ----> Name  cluster_metagene : 
#>           1         2         3         4     5
#>       <num>     <num>     <num>     <num> <num>
#> 1: 1.014837 0.0000000 0.3160792 0.0000000     0
#> 2: 3.207415 0.9579716 0.6728505 0.2132677     0
#> 3: 3.953661 0.4604975 0.0000000 0.2302488     0
#> 4: 4.093622 0.5886051 0.1962017 0.5886051     0
#>                                    cell_ID
#>                                     <char>
#> 1: 240649020551054330404932383065726870513
#> 2: 274176126496863898679934791272921588227
#> 3: 323754550002953984063006506310071917306
#> 4:  87260224659312905497866017323180367450