Package index • GiottoUtils

All functions

radians() degrees(): Radian/degree conversions

deprecate_param(): Deprecate a parameter

dir_manifest(): Generate file manifest list from a directory

dt_dcast_string(): dt_dcast_string

dt_remove_na(): dt_remove_na

dt_set_row_order(): Set specific data.table row order

dt_sort_combine_two_columns(): dt_sort_combine_two_columns

dt_to_matrix(): dt_to_matrix

file_extension(): Get file extension

getDistinctColors(): getDistinctColors

getMonochromeColors(): Create color scaling for a single color starting from black

getRainbowColors(): getRainbowColors

giottoNewLog(): Create a new Giotto log

giottoReadLog(): Read from the last generated log file

giotto_bpparam(): Giotto Default BiocParallel Param

gstop(): Module-specific error message

handle_errors(): Error handling

handle_warnings(): Warning handling

init_option(): Initialize an option

lifecycle_badge(): lifecycle badge

local_seed(): Set a seed local to a call

log_write(): Write to log file

melt_matrix(): Melt a matrix

new_github_ver_avail(): Check if a package has newer github version

pbar(): Create a progressr progress tracker.

get_prev_call() get_prev_fname() get_args() get_args_list(): Previous calls

print_list(): Pretty print formatting for lists and vectors

py_active_env(): Active python environment

random_seed(): Set a random seed

require_depth(): Coerce to AT LEAST specified nesting depth

to_scipy_sparse() from_scipy_sparse(): Convert between Matrix and scipy sparse representations

`%null%` `%na%` `%none%`: Set if

str_abbreviate(): Abbreviate a string

str_vector() str_bracket() str_parenth() str_double_quote() str_quote() str_reformat(): String convenience functions

str_locate2(): Find location of match in string

suite_install() experimental: Giotto Suite GitHub Installation

suite_packages(): Giotto Suite Packages

time_format(): Format time for printing

vmsg(): Verbose message handler

gwith_options() gwith_package() gwith_seed(): With utilities

with_pbar(): Track progress while evaluating an R expression

wrap_msg(): Wrap message

wrap_txt() wrap_txtf(): Wrap text