Plots network statistics for a Delaunay network..
Usage
plotStatDelaunayNetwork(
gobject,
feat_type = NULL,
spat_unit = NULL,
method = c("deldir", "delaunayn_geometry", "RTriangle"),
dimensions = "all",
maximum_distance = "auto",
minimum_k = 0,
options = "Pp",
Y = TRUE,
j = TRUE,
S = 0,
show_plot = NULL,
return_plot = NULL,
save_plot = NULL,
save_param = list(),
default_save_name = "plotStatDelaunayNetwork",
...
)Arguments
- gobject
giotto object
- feat_type
feature type (e.g. "rna", "dna", "protein")
- spat_unit
spatial unit (e.g. "cell")
- method
package to use to create a Delaunay network
- dimensions
which spatial dimensions to use (maximum 2 dimensions)
- maximum_distance
distance cuttof for Delaunay neighbors to consider
- minimum_k
minimum neigbhours if maximum_distance != NULL
- options
(geometry) String containing extra control options for the underlying Qhull command; see the Qhull documentation (../doc/qhull/html/qdelaun.html) for the available options. (default = 'Pp', do not report precision problems)
- Y
(RTriangle) If TRUE prohibits the insertion of Steiner points on the mesh boundary.
- j
(RTriangle) If TRUE jettisons vertices that are not part of the final triangulation from the output.
- S
(RTriangle) Specifies the maximum number of added Steiner points.
- show_plot
logical. show plot
- return_plot
logical. return ggplot object
- save_plot
logical. save the plot
- save_param
list of saving parameters, see
showSaveParameters- default_save_name
default save name for saving, don't change, change save_name in save_param
- ...
Other parameters