provide grid segment to draw in plot_ly()
Usage
plotly_grid(
spatial_grid,
x_start = "x_start",
y_start = "y_start",
x_end = "x_end",
y_end = "y_end"
)Arguments
- spatial_grid
spatial_grid in giotto object
- x_start
default to "x_start"
- y_start
default to "y_start"
- x_end
default to "x_end"
- y_end
default to "y_end"
Examples
g <- GiottoData::loadGiottoMini("visium", verbose = FALSE)
#>
#> 1. use installGiottoEnvironment() to install
#> a local miniconda python environment along with required modules
#>
#> 2. provide an existing python path to
#> python_path to use your own python path which has all modules
#> installed
#> Set options("giotto.use_conda" = FALSE) if
#> python functionalities are not needed
library(GiottoClass)
g <- createSpatialGrid(gobject = g,
sdimx_stepsize = 400,
sdimy_stepsize = 400,
minimum_padding = 0)
my_spatial_grid <- getSpatialGrid(g)
#> The grid name was not specified, default to the first: "spatial_grid"
plotly_grid(my_spatial_grid)
#> edge_id x y x_end y_end
#> <int> <num> <num> <num> <num>
#> 1: 1 2955 -5605 2955 -2405
#> 2: 2 3355 -5605 3355 -2405
#> 3: 3 3755 -5605 3755 -2405
#> 4: 4 4155 -5605 4155 -2405
#> 5: 5 4555 -5605 4555 -2405
#> 6: 6 4955 -5605 4955 -2405
#> 7: 7 5355 -5605 5355 -2405
#> 8: 8 5755 -5605 5755 -2405
#> 9: 9 6155 -5605 6155 -2405
#> 10: 10 6555 -5605 6555 -2405
#> 11: 11 2955 -5605 6555 -5605
#> 12: 12 2955 -5205 6555 -5205
#> 13: 13 2955 -4805 6555 -4805
#> 14: 14 2955 -4405 6555 -4405
#> 15: 15 2955 -4005 6555 -4005
#> 16: 16 2955 -3605 6555 -3605
#> 17: 17 2955 -3205 6555 -3205
#> 18: 18 2955 -2805 6555 -2805
#> 19: 19 2955 -2405 6555 -2405