This function return histograms displaying the distance distribution for each spatial k-neighbor
Usage
spatNetwDistributionsDistance(
gobject,
spat_unit = NULL,
spatial_network_name = "spatial_network",
hist_bins = 30,
test_distance_limit = NULL,
ncol = 1,
show_plot = NULL,
return_plot = NULL,
save_plot = NULL,
save_param = list(),
default_save_name = "spatNetwDistributionsDistance"
)Arguments
- gobject
giotto object
- spat_unit
spatial unit (e.g. "cell")
- spatial_network_name
name of spatial network
- hist_bins
number of binds to use for the histogram
- test_distance_limit
effect of different distance threshold on k-neighbors
- ncol
number of columns to visualize the histograms in
- show_plot
logical. show plot
- return_plot
logical. return ggplot object
- save_plot
logical. save the plot
- save_param
list of saving parameters, see
showSaveParameters- default_save_name
default save name for saving, don't change, change save_name in save_param