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This function return histograms displaying the distance distribution for each spatial k-neighbor

Usage

spatNetwDistributionsDistance(
  gobject,
  spat_unit = NULL,
  spatial_network_name = "spatial_network",
  hist_bins = 30,
  test_distance_limit = NULL,
  ncol = 1,
  show_plot = NULL,
  return_plot = NULL,
  save_plot = NULL,
  save_param = list(),
  default_save_name = "spatNetwDistributionsDistance"
)

Arguments

gobject

giotto object

spat_unit

spatial unit (e.g. "cell")

spatial_network_name

name of spatial network

hist_bins

number of binds to use for the histogram

test_distance_limit

effect of different distance threshold on k-neighbors

ncol

number of columns to visualize the histograms in

show_plot

logical. show plot

return_plot

logical. return ggplot object

save_plot

logical. save the plot

save_param

list of saving parameters, see showSaveParameters

default_save_name

default save name for saving, don't change, change save_name in save_param

Value

ggplot plot