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Set spatial network

setSpatialNetwork.Rd

Function to set a spatial network

Usage

setSpatialNetwork(
  gobject,
  x,
  spat_unit = NULL,
  name = NULL,
  provenance = NULL,
  verbose = TRUE,
  initialize = TRUE
)

Arguments

gobject

giotto object

x

spatialNetworkObj or list of spatialNetworkObj to set. Passing NULL removes a specified set of spatial network information from the gobject.

spat_unit

spatial unit (e.g. "cell")

name

name of spatial network

provenance

provenance name

verbose

be verbose

initialize

(default = FALSE) whether to initialize the gobject before returning

Value

giotto object

See also

Other spatial network data accessor functions: getSpatialNetwork(), get_spatialNetwork(), set_spatialNetwork()

Other functions to set data in giotto object: get_cell_id(), get_feat_id(), setCellMetadata(), setDimReduction(), setExpression(), setFeatureInfo(), setFeatureMetadata(), setGiottoImage(), setMultiomics(), setNearestNetwork(), setPolygonInfo(), setSpatialEnrichment(), setSpatialGrid(), setSpatialLocations(), set_NearestNetwork(), set_cell_id(), set_cell_metadata(), set_dimReduction(), set_expression_values(), set_feat_id(), set_feature_info(), set_feature_metadata(), set_giottoImage(), set_multiomics(), set_polygon_info(), set_spatialGrid(), set_spatialNetwork(), set_spatial_enrichment(), set_spatial_locations()