Function to set expression values for giotto object
Usage
set_expression_values(
gobject,
values,
spat_unit = NULL,
feat_type = NULL,
name = "test",
provenance = NULL,
verbose = TRUE,
set_defaults = TRUE,
initialize = FALSE
)Arguments
- gobject
giotto object
- values
exprObj If NULL, then the object will be removed.
- spat_unit
spatial unit (e.g. "cell")
- feat_type
feature type (e.g. "rna", "dna", "protein")
- name
name for the expression slot
- provenance
provenance information (optional)
- verbose
be verbose
- set_defaults
set default spat_unit and feat_type. Change to FALSE only when expression and spat_info are not expected to exist.
- initialize
(default = FALSE) whether to initialize the gobject before returning. Will be set to TRUE when called by the external
See also
Other expression accessor functions:
getExpression(),
setExpression()
Other functions to set data in giotto object:
get_cell_id(),
get_feat_id(),
setCellMetadata(),
setDimReduction(),
setExpression(),
setFeatureInfo(),
setFeatureMetadata(),
setGiottoImage(),
setMultiomics(),
setNearestNetwork(),
setPolygonInfo(),
setSpatialEnrichment(),
setSpatialGrid(),
setSpatialLocations(),
setSpatialNetwork(),
set_NearestNetwork(),
set_cell_id(),
set_cell_metadata(),
set_dimReduction(),
set_feat_id(),
set_feature_info(),
set_feature_metadata(),
set_giottoImage(),
set_multiomics(),
set_polygon_info(),
set_spatialGrid(),
set_spatialNetwork(),
set_spatial_enrichment(),
set_spatial_locations()