Function to set a spatial enrichment slot
Usage
set_spatial_enrichment(
gobject,
spatenrichment,
spat_unit = NULL,
feat_type = NULL,
enrichm_name = "enrichment",
provenance = NULL,
verbose = TRUE,
set_defaults = TRUE,
initialize = FALSE
)Arguments
- gobject
giotto object
- spatenrichment
spatial enrichment results
- spat_unit
spatial unit (e.g. "cell")
- feat_type
feature type (e.g. "rna", "dna", "protein")
- enrichm_name
name of spatial enrichment results. Default "DWLS"
- provenance
provenance information (optional)
- verbose
be verbose
- set_defaults
set default spat_unit and feat_type. Change to FALSE only when expression and spat_info are not expected to exist.
- initialize
(default = FALSE) whether to initialize the gobject before returning
See also
Other spatial enrichment data accessor functions:
getSpatialEnrichment(),
get_spatial_enrichment(),
setSpatialEnrichment()
Other functions to set data in giotto object:
get_cell_id(),
get_feat_id(),
setCellMetadata(),
setDimReduction(),
setExpression(),
setFeatureInfo(),
setFeatureMetadata(),
setGiottoImage(),
setMultiomics(),
setNearestNetwork(),
setPolygonInfo(),
setSpatialEnrichment(),
setSpatialGrid(),
setSpatialLocations(),
setSpatialNetwork(),
set_NearestNetwork(),
set_cell_id(),
set_cell_metadata(),
set_dimReduction(),
set_expression_values(),
set_feat_id(),
set_feature_info(),
set_feature_metadata(),
set_giottoImage(),
set_multiomics(),
set_polygon_info(),
set_spatialGrid(),
set_spatialNetwork(),
set_spatial_locations()