Function to set a spatial network
Usage
set_spatialNetwork(
gobject,
spatial_network,
spat_unit = NULL,
name = NULL,
provenance = NULL,
verbose = TRUE,
set_defaults = TRUE,
initialize = FALSE
)Arguments
- gobject
giotto object
- spatial_network
spatial network
- spat_unit
spatial unit (e.g. "cell")
- name
name of spatial network
- provenance
provenance name
- verbose
be verbose
- set_defaults
set default spat_unit and feat_type. Change to FALSE only when expression and spat_info are not expected to exist.
- initialize
(default = FALSE) whether to initialize the gobject before returning
See also
Other spatial network data accessor functions:
getSpatialNetwork(),
get_spatialNetwork(),
setSpatialNetwork()
Other functions to set data in giotto object:
get_cell_id(),
get_feat_id(),
setCellMetadata(),
setDimReduction(),
setExpression(),
setFeatureInfo(),
setFeatureMetadata(),
setGiottoImage(),
setMultiomics(),
setNearestNetwork(),
setPolygonInfo(),
setSpatialEnrichment(),
setSpatialGrid(),
setSpatialLocations(),
setSpatialNetwork(),
set_NearestNetwork(),
set_cell_id(),
set_cell_metadata(),
set_dimReduction(),
set_expression_values(),
set_feat_id(),
set_feature_info(),
set_feature_metadata(),
set_giottoImage(),
set_multiomics(),
set_polygon_info(),
set_spatialGrid(),
set_spatial_enrichment(),
set_spatial_locations()