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Set spatial network

set_spatialNetwork.Rd

Function to set a spatial network

Usage

set_spatialNetwork(
  gobject,
  spatial_network,
  spat_unit = NULL,
  name = NULL,
  provenance = NULL,
  verbose = TRUE,
  set_defaults = TRUE,
  initialize = FALSE
)

Arguments

gobject

giotto object

spatial_network

spatial network

spat_unit

spatial unit (e.g. "cell")

name

name of spatial network

provenance

provenance name

verbose

be verbose

set_defaults

set default spat_unit and feat_type. Change to FALSE only when expression and spat_info are not expected to exist.

initialize

(default = FALSE) whether to initialize the gobject before returning

Value

giotto object

See also

Other spatial network data accessor functions: getSpatialNetwork(), get_spatialNetwork(), setSpatialNetwork()

Other functions to set data in giotto object: get_cell_id(), get_feat_id(), setCellMetadata(), setDimReduction(), setExpression(), setFeatureInfo(), setFeatureMetadata(), setGiottoImage(), setMultiomics(), setNearestNetwork(), setPolygonInfo(), setSpatialEnrichment(), setSpatialGrid(), setSpatialLocations(), setSpatialNetwork(), set_NearestNetwork(), set_cell_id(), set_cell_metadata(), set_dimReduction(), set_expression_values(), set_feat_id(), set_feature_info(), set_feature_metadata(), set_giottoImage(), set_multiomics(), set_polygon_info(), set_spatialGrid(), set_spatial_enrichment(), set_spatial_locations()