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Set giotto image object

set_giottoImage.Rd

Directly attach a giotto image to giotto object

Usage

set_giottoImage(
  gobject = NULL,
  image = NULL,
  image_type = NULL,
  name = NULL,
  verbose = TRUE
)

Arguments

gobject

giotto object

image

giotto image object to be attached without modification to the giotto object

image_type

type of giotto image object. Either "image" or "largeImage"

name

name of giotto image object

verbose

be verbose

Value

giotto object

Details

Use with care! This function directly attaches giotto image objects to the gobject without further modifications of spatial positioning values within the image object that are generally needed in order for them to plot in the correct location relative to the other modalities of spatial data.
For the more general-purpose method of attaching image objects, see addGiottoImage

See also

addGiottoImage

Other image data accessor functions: getGiottoImage(), get_giottoImage(), setGiottoImage()

Other functions to set data in giotto object: get_cell_id(), get_feat_id(), setCellMetadata(), setDimReduction(), setExpression(), setFeatureInfo(), setFeatureMetadata(), setGiottoImage(), setMultiomics(), setNearestNetwork(), setPolygonInfo(), setSpatialEnrichment(), setSpatialGrid(), setSpatialLocations(), setSpatialNetwork(), set_NearestNetwork(), set_cell_id(), set_cell_metadata(), set_dimReduction(), set_expression_values(), set_feat_id(), set_feature_info(), set_feature_metadata(), set_multiomics(), set_polygon_info(), set_spatialGrid(), set_spatialNetwork(), set_spatial_enrichment(), set_spatial_locations()