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Giotto
4.1.0
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Giotto Installation
Giotto Ecosystem
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General Giotto Workflow
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Examples
Seq-Scope
Mouse liver
Visium
Visium Mouse Kidney
Visium Mouse Brain
Visium Prostate Integration
CytAssist Human Lung Cancer
CytAssist Multi-omics Human Glioblastoma
Slide-seq
Slide-seq Mouse brain
Spatial Genomics
Mouse Kidney
DBiT-Seq
Multi-omics Mouse Embryo DBiT-Seq
Spatial CITE-Seq
Multi-omics Spatial CITE-Seq Human skin
Xenium
Xenium Human breast cancer
Nanostring CosMx
Nanostring CosMx Subcellular Lung Cancer
MERFISH
MERFISH Mouse Hypothalamic Preoptic Region
Vizgen
Vizgen Mouse Brain Receptor Map
Open-ST
Open-ST Mouse Hippocampus
seqFISH
mini seqFISH
SeqFish+ Mouse Cortex Example
osmFISH
osmFISH Mouse SS Cortex
Resolve Bioscience
Resolve Bioscience Breast Cancer Subcellular
Resolve Bioscience Human lung
CODEX
Codex Mouse Spleen
Single Cell RNA Sequencing
Prostate
Prostate Integration
Human Lung Adenocarcinoma
Tutorials
Giotto Object Creation
Giotto Object Creation
Giotto Configuration
Giotto Configuration
Process Giotto
Process Giotto convenience function
Spatial manipulation
Spatial transformations
Spatial geometries
Image alignment
Image alignment
Interactive selection
Interactive selection
Visualizations
Visualizations
Saving and Loading
Saving a Giotto object
Saving plots
Interoperability
AnnData
SpatialExperiment
Seurat
Integrate Bento Analysis
SpatialData
Try Giotto in the Cloud
Giotto on Terra.bio
NeMO Slide-seq on Terra.bio
Containers
Docker
Singularity
Scalability
Using dbMatrix with Giotto
News
Changes
Presentations
Branches
Presentations
Source:
vignettes/presentations.Rmd
presentations.Rmd
Giotto workshop 2024
BioC 2023
The Visualization and User Experience Seminars, November 21st 2023
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