Giotto stores information in different slots, which can be accessed through these getters and setters functions. They can be found in the accessors.R file.
setGiotto(): Sets any Giotto subobject
getCellMetadata(): Gets cell metadata
setCellMetadata(): Sets cell metadata
getFeatureMetadata(): Gets feature metadata
getFeatureMetadata(): Sets feature metadata
getExpression(): To select the expression matrix to use
setExpression(): Sets a new expression matrix to the expression slot
getSpatialLocations(): Get spatial locations to use
setSpatialLocations(): Sets new spatial locations
getDimReduction(): To select the dimension reduction values to use
setDimReduction(): Sets new dimension reduction object
getNearestNetwork(): To select the nearest neighbor network (kNN or sNN) to use
setNearestNetwork(): Sets a new nearest neighbor network (kNN or sNN)
getSpatialNetwork(): To select the spatial network to use
setSpatialNetwork(): Sets a new spatial network
getPolygonInfo(): Gets spatial polygon information
setPolygonInfo(): Set new spatial polygon information
getFeatureInfo(): Gets spatial feature information
setFeatureInfo(): Sets new spatial feature information
getSpatialEnrichment(): Gets spatial enrichment information
setSpatialEnrichment(): Sets new spatial enrichment information
getMultiomics(): Gets multiomics information
setMultiomics(): Sets multiomics information