Create a Giotto object from an ArchR project — createGiottoObjectfromArchR • Giotto

Create a Giotto object from an ArchR project

createGiottoObjectfromArchR(
  archRproj,
  expression = NULL,
  expression_feat = "atac",
  spatial_locs = NULL,
  sampleNames = "sample1",
  ...
)

Arguments

archRproj: ArchR project
expression: expression information
expression_feat: Giotto object available features (e.g. atac, rna, ...)
spatial_locs: data.table or data.frame with coordinates for cell centroids
sampleNames: A character vector containing the ArchR project sample name
...: additional arguments passed to `createGiottoObject`

Value

A Giotto object with at least an atac or epigenetic modality