crossSectionFeatPlot

Source: R/cross_section.R

Visualize cells and feature expression in a virtual cross section according to spatial coordinates

crossSectionFeatPlot(
  gobject = NULL,
  spat_unit = NULL,
  feat_type = NULL,
  spat_loc_name = "raw",
  crossSection_obj = NULL,
  name = NULL,
  spatial_network_name = "Delaunay_network",
  default_save_name = "crossSectionGenePlot",
  ...
)

Arguments

gobject

giotto object

spat_unit

spatial unit

feat_type

feature type

spat_loc_name

name of spatial locations

crossSection_obj

crossSection object

name

name of virtual cross section to use

spatial_network_name

name of spatial network to use

default_save_name

default save name for saving, don't change, change save_name in save_param

...

parameters for spatFeatPlot2D

Value

ggplot

Details

Description of parameters.