Visualize cells and feature expression in a virtual cross section according to spatial coordinates

crossSectionFeatPlot3D(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  crossSection_obj = NULL,
  name = NULL,
  spatial_network_name = "Delaunay_network",
  show_other_cells = TRUE,
  other_cell_color = alpha("lightgrey", 0),
  default_save_name = "crossSectionGenePlot3D",
  ...
)

Arguments

gobject

giotto object

spat_unit

spatial unit

feat_type

feature type

crossSection_obj

cross section object as alternative input. default = NULL.

name

name of virtual cross section to use

spatial_network_name

name of spatial network to use

show_other_cells

logical. Default = TRUE

other_cell_color

color of cells outside the cross section. default = transparent.

default_save_name

default save name for saving, don't change, change save_name in save_param

...

parameters for spatGenePlot3D

Value

ggplot

Details

Description of parameters.