crossSectionPlot — crossSectionPlot • Giotto

Visualize cells in a virtual cross section according to spatial coordinates

crossSectionPlot(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  spat_loc_name = "raw",
  crossSection_obj = NULL,
  name = NULL,
  spatial_network_name = "Delaunay_network",
  default_save_name = "crossSectionPlot",
  ...
)

Arguments

gobject: giotto object
spat_unit: spatial unit
feat_type: feature type
spat_loc_name: name of spatial locations
crossSection_obj: cross section object as alternative input. default = NULL.
name: name of virtual cross section to use
spatial_network_name: name of spatial network to use
default_save_name: default save name for saving, don't change, change save_name in save_param
...: parameters for spatPlot2D

Value

ggplot

Details

Description of parameters.

See also

crossSectionPlot