Filter Interaction Changed Gene scores.

filterCPG(...)

Arguments

...

Arguments passed on to filterICF

icfObject

ICF (interaction changed feature) score object

min_cells

minimum number of source cell type

min_cells_expr

minimum expression level for source cell type

min_int_cells

minimum number of interacting neighbor cell type

min_int_cells_expr

minimum expression level for interacting neighbor cell type

min_fdr

minimum adjusted p-value

min_spat_diff

minimum absolute spatial expression difference

min_log2_fc

minimum log2 fold-change

min_zscore

minimum z-score change

zscores_column

calculate z-scores over cell types or genes

direction

differential expression directions to keep

Value

filtered interaction changed gene scores

See also