Split cluster annotations based on a spatial network

identifyTMAcores(
  gobject,
  spat_unit = NULL,
  feat_type = NULL,
  spatial_network_name = "Delaunay_network",
  core_id_name = "core_id",
  include_all_ids = TRUE,
  missing_id_name = "not_connected",
  return_gobject = TRUE
)

Arguments

gobject: giotto object
spat_unit: spatial unit (e.g. "cell")
feat_type: feature type (e.g. "rna", "dna", "protein")
spatial_network_name: character. Name of spatial network to use
core_id_name: metadata column name for the core information
include_all_ids: Boolean. Include all ids, including vertex ids not found in the spatial network
missing_id_name: Character. Name for vertices that were missing from spatial network
return_gobject: Boolean. Return giotto object

Value

cluster annotations