Import a 10X Xenium Assay

Giotto import functionalities for Xenium datasets. This function creates a `XeniumReader` instance that has convenient reader functions for converting individual pieces of Xenium data into Giotto-compatible representations.

These functions should have all param values provided as defaults, but can be flexibly modified to do things such as look in alternative directories or paths

importXenium(xenium_dir = NULL, qv_threshold = 20)

Arguments

xenium_dir

Xenium output directory

qv_threshold

Minimum Phred-scaled quality score cutoff to be included as a subcellular transcript detection (default = 20)

Value

`XeniumReader` object