loadOntraCResults

load ONTraC results

loadOntraCResults(
  gobject,
  ontrac_results_dir = getwd(),
  preprocessing_dir = file.path(ontrac_results_dir, "preprocessing_dir"),
  GNN_dir = file.path(ontrac_results_dir, "GNN_dir"),
  NTScore_dir = file.path(ontrac_results_dir, "NTScore_dir"),
  NTScore_reverse = FALSE
)

Arguments

gobject

giotto object

ontrac_results_dir

the directory where the ONTraC results are saved

preprocessing_dir

the directory to save the preprocessing results. Default is file.path(ontrac_results_dir, "preprocessing_dir")

GNN_dir

the directory to save the GNN results. Default is file.path(ontrac_results_dir, "GNN_dir")

NTScore_dir

the directory to save the NTScore results. Default is file.path(ontrac_results_dir, "NTScore_dir")

NTScore_reverse

whether to reverse the NTScore. Default is FALSE

Value

gobject with ONTraC results

Details

This function loads the ONTraC results into the giotto object.