load_cell_niche_cluster_prob

load cell-niche cluster probability

load_cell_niche_cluster_prob(
  gobject,
  ontrac_results_dir = getwd(),
  spat_unit = "cell",
  feat_type = "niche cluster",
  name = "prob"
)

Arguments

gobject

giotto object

ontrac_results_dir

the directory where the ONTraC results are saved

spat_unit

spatial unit (e.g. "cell")

feat_type

feature type (e.g. "rna", "dna", "protein")

name

name for the probability matrix

Value

gobject with cell-niche cluster probability matrix

Details

This function loads the ONTraC outputed cell-niche cluster probability as an exprObj into the giotto object.