Load MERSCOPE data from folder

Source: R/convenience_general.R

Load MERSCOPE data from folder

.load_merscope_folder(
  dir_items,
  data_to_use,
  fovs = NULL,
  poly_z_indices = seq(from = 1, to = 7),
  cores = NA,
  verbose = TRUE
)

.load_merscope_folder_subcellular(
  dir_items,
  data_to_use,
  cores = NA,
  poly_z_indices = 1L:7L,
  verbose = TRUE,
  fovs = NULL
)

.load_merscope_folder_aggregate(
  dir_items,
  data_to_use,
  cores = NA,
  verbose = TRUE
)

Arguments

dir_items

list of full filepaths from .read_merscope_folder

data_to_use

which of either the 'subcellular' or 'aggregate' information to use for object creation

cores

how many cores or threads to use to read data if paths are provided

verbose

be verbose when building Giotto object

Value

list of loaded-in MERSCOPE data

Functions

  • .load_merscope_folder_subcellular(): Load items for 'subcellular' workflow

  • .load_merscope_folder_aggregate(): Load items for 'aggregate' workflow