load_nc_connectivity

load niche cluster connectivity

load_nc_connectivity(
  gobject,
  ontrac_results_dir = getwd(),
  spat_unit = "niche cluster",
  feat_type = "connectivity",
  name = "normalized"
)

Arguments

gobject

giotto object

ontrac_results_dir

the directory where the ONTraC results are saved

spat_unit

spatial unit (e.g. "cell")

feat_type

feature type (e.g. "rna", "dna", "protein")

name

name for the connectivity matrix

Value

gobject with niche cluster connectivity matrix

Details

This function loads the ONTraC outputed niche cluster connectivity matrix as an exprObj into the giotto object.