plotSpatNicheClusterProb — plotSpatNicheClusterProb • Giotto

plot spatial niche cluster probability

plotSpatNicheClusterProb(
  gobject,
  spat_unit = "cell",
  feat_type = "niche cluster",
  expression_values = "prob",
  ...,
  default_save_name = "spatNicheClusterProb"
)

Arguments

gobject: giotto object
spat_unit: name of spatial unit niche stored cluster features
feat_type: name of the feature type stored probability matrix
expression_values: name of the expression matrix stored probability values
...: additional arguments to be passed to the spatFeatPlot2D function
default_save_name: default save name for saving, don't change, change save_name in save_param

Value

ggplot

Details

This function plots the spatial niche cluster probability