Read a 10x image that is provided with an affine matrix transform. Loads the image in with an orientation that matches the dataset points and polygons vector information
read10xAffineImage(
file,
imagealignment_path,
name = "aligned_image",
micron = 0.2125,
...
)filepath to image
filepath to alignment file which contains
an affine transformation matrix. Usually a .csv file
character. Name to assign the image. Default is 'image'.
micron scaling. Directly used if a numeric is supplied.
Also prefers a filepath to the experiment.xenium file which contains this
info. A default of 0.2125 is provided.
additional params to pass to
[GiottoClass::createGiottoLargeImage]
10xAffineImage