plot NTScore by cell type
plotCellTypeNTScore(
gobject,
cell_type,
values = "NTScore",
spat_unit = "cell",
feat_type = "niche cluster",
show_plot = NULL,
return_plot = NULL,
save_plot = NULL,
save_param = list(),
theme_param = list(),
default_save_name = "discreteAlongContinuous"
)
Arguments
- gobject
giotto object
- cell_type
the cell type column name in the metadata
- spat_unit
spatial unit (e.g. "cell")
- feat_type
feature type (e.g. "rna", "dna", "protein")
- show_plot
logical. show plot
- return_plot
logical. return ggplot object
- save_plot
logical. save the plot
- save_param
list of saving parameters, see showSaveParameters
- default_save_name
default save name for saving, don't change, change save_name in save_param