show patterns for 2D spatial data
showPattern2D(
gobject,
spatPatObj,
dimension = 1,
trim = c(0.02, 0.98),
background_color = "white",
grid_border_color = "grey",
show_legend = TRUE,
point_size = 1,
show_plot = NULL,
return_plot = NULL,
save_plot = NULL,
save_param = list(),
default_save_name = "showPattern2D"
)
Arguments
- gobject
giotto object
- spatPatObj
Output from detectSpatialPatterns
- dimension
dimension to plot
- trim
Trim ends of the PC values.
- background_color
background color for plot
- grid_border_color
color for grid
- show_legend
show legend of ggplot
- point_size
size of points
- show_plot
show plot
- return_plot
return ggplot object
- save_plot
directly save the plot [boolean]
- save_param
list of saving parameters, see
showSaveParameters
- default_save_name
default save name for saving, don't change,
change save_name in save_param