Create barplot from cell-cell proximity scores
cellProximityBarplot(
gobject,
CPscore,
min_orig_ints = 5,
min_sim_ints = 5,
p_val = 0.05,
show_plot = NULL,
return_plot = NULL,
save_plot = NULL,
save_param = list(),
default_save_name = "cellProximityBarplot"
)
giotto object
CPscore, output from cellProximityEnrichment()
filter on minimum original cell-cell interactions
filter on minimum simulated cell-cell interactions
p-value
logical. show plot
logical. return ggplot object
logical. save the plot
list of saving parameters, see showSaveParameters
default save name for saving, don't change, change save_name in save_param
ggplot barplot
This function creates a barplot that shows the spatial proximity enrichment or depletion of cell type pairs. @examples g <- GiottoData::loadGiottoMini("visium")
cellProximityBarplot(gobject = g, CPscore = cellProximityEnrichment(g, cluster_column = "leiden_clus"))